Files in haibol2016/ArchR_debug
Analyzing single-cell regulatory chromatin in R.

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R/AllClasses.R R/AnnotationGenome.R R/AnnotationPeaks.R R/ArchRBrowser.R R/ArchRHeatmap.R R/ArrowRead.R R/ArrowUtils.R R/ArrowWrite.R R/BulkProjection.R R/Clustering.R R/ColorPalettes.R R/CreateArrow.R R/DoubletsScores.R R/Embedding.R R/FilterCells.R R/Footprinting.R R/GRangesUtils.R R/GgplotUtils.R R/GlobalDefaults.R R/GroupCoverages.R R/GroupExport.R R/Harmony.R R/HelperUtils.R R/HiddenUtils.R R/Imputation.R R/InputData.R R/IntegrativeAnalysis.R R/IterativeLSI.R R/LoggerUtils.R R/MarkerFeatures.R R/MatrixDeviations.R R/MatrixFeatures.R R/MatrixGeneExpression.R R/MatrixGeneScores.R R/MatrixTiles.R R/ModuleScore.R R/MultiModal.R R/ProjectMethods.R R/QualityControl.R R/RNAIntegration.R R/RcppExports.R R/ReproduciblePeakSet.R R/Trajectory.R R/ValidationUtils.R R/VisualizeData.R README.md

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data/geneAnnoHg19.rda

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man/ArchRBrowser.Rd man/ArchRPalettes.Rd man/ArchRProject.Rd man/addArchRAnnotations.Rd man/addArchRChrPrefix.Rd man/addArchRDebugging.Rd man/addArchRGenome.Rd man/addArchRLogging.Rd man/addArchRThreads.Rd man/addArchRVerbose.Rd man/addBgdPeaks.Rd man/addCellColData.Rd man/addClusters.Rd man/addCoAccessibility.Rd man/addCombinedDims.Rd man/addDemuxletResults.Rd man/addDeviationsMatrix.Rd man/addDoubletScores.Rd man/addFeatureCounts.Rd man/addFeatureMatrix.Rd man/addGeneExpressionMatrix.Rd man/addGeneIntegrationMatrix.Rd man/addGeneScoreMatrix.Rd man/addGroupCoverages.Rd man/addHarmony.Rd man/addImputeWeights.Rd man/addIterativeLSI.Rd man/addModuleScore.Rd man/addMonocleTrajectory.Rd man/addMotifAnnotations.Rd man/addPeak2GeneLinks.Rd man/addPeakAnnotations.Rd man/addPeakMatrix.Rd man/addPeakSet.Rd man/addProjectSummary.Rd man/addReproduciblePeakSet.Rd man/addSampleColData.Rd man/addSlingShotTrajectories.Rd man/addTSNE.Rd man/addTileMatrix.Rd man/addTrajectory.Rd man/addUMAP.Rd man/cash-.ArchRProject.Rd man/cash-set-.ArchRProject.Rd man/confusionMatrix.Rd man/correlateMatrices.Rd man/correlateTrajectories.Rd man/createArrowFiles.Rd man/createGeneAnnotation.Rd man/createGenomeAnnotation.Rd man/createLogFile.Rd man/dot-DollarNames.ArchRProject.Rd man/exportPeakMatrixForSTREAM.Rd man/extendGR.Rd

man/figures/ArchR_Workflow.png

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src/Correlation.cpp

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src/General_Utils.cpp

src/KNN_Utils.cpp

src/Kmer_Bias.cpp

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haibol2016/ArchR_debug documentation built on June 15, 2022, 5:42 p.m.

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haibol2016/ArchR_debug
Analyzing single-cell regulatory chromatin in R.

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Analyzing single-cell regulatory chromatin in R.

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haibol2016/ArchR_debug
Analyzing single-cell regulatory chromatin in R.

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Analyzing single-cell regulatory chromatin in R.