Files in heiniglab/scPower

Experimental design framework for scRNAseq population studies (eQTL and DE)

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/general_question.md R/datasets.R R/em.R R/expression_fit.R R/plotting.R R/power.R R/priors.R R/runShiny.R README.md inst/shinyApp/server.R inst/shinyApp/ui.R man/annot.df.Rd man/annot_smartseq.Rd man/budget.optimization.Rd man/budgetCalculation.Rd man/budgetCalculation.libPrepCell.Rd man/budgetCalculation.restrictedDoublets.Rd man/calculate.gene.counts.Rd man/calculate.probabilities.Rd man/cellsBudgetCalculation.Rd man/cellsBudgetCalculation.libPrepCell.Rd man/cellsBudgetCalculation.restrictedDoublets.Rd man/convert.gamma.parameters.Rd man/count.matrix.example.Rd man/counts_smartseq.Rd man/create.pseudobulk.Rd man/de.ref.study.Rd man/disp.fun.param.Rd man/disp.fun.param.drop.Rd man/disp.fun.param.smart.Rd man/dispersion.function.estimation.Rd man/effectSize.DE.simulation.Rd man/effectSize.eQTL.simulation.Rd man/eqtl.ref.study.Rd man/estimate.exp.prob.count.param.Rd man/estimate.exp.prob.param.Rd man/estimate.exp.prob.values.Rd man/estimate.mean.dsp.values.Rd man/estimate.size.simulation.Rd man/fdr.optimization.Rd man/gamma.mixed.fits.Rd man/gamma.mixed.fits.drop.Rd man/gamma.mixed.fits.smart.Rd man/gene.rank.calculation.Rd man/gene.rank.calculation.vector.Rd man/gene_length.Rd man/meanUMI.calculation.Rd man/mixed.gamma.estimation.Rd man/nbinom.estimation.Rd man/number.cells.detect.celltype.Rd man/observed.gene.counts.Rd man/optimize.constant.budget.Rd man/optimize.constant.budget.libPrepCell.Rd man/optimize.constant.budget.restrictedDoublets.Rd man/optimize.constant.budget.smartseq.Rd man/optimizeSizeFactor.Rd man/parametricDispersionFit_DEseq.Rd man/power.de.Rd man/power.detect.celltype.Rd man/power.eqtl.Rd man/power.eqtl.ftest.Rd man/power.eqtl.simulated.Rd man/power.eqtl.simulated.help.Rd man/power.general.restrictedDoublets.Rd man/power.general.withDoublets.Rd man/power.sameReadDepth.restrictedDoublets.Rd man/power.sameReadDepth.withDoublets.Rd man/power.smartseq.Rd man/print_optimalDesign_10X.Rd man/read.umi.fit.Rd man/readDepthBudgetCalculation.Rd man/readDepthBudgetCalculation.libPrepCell.Rd man/readDepthBudgetCalculation.restrictedDoublets.Rd man/runShiny.Rd man/sample.disp.values.Rd man/sample.mean.values.quantiles.Rd man/sample.mean.values.random.Rd man/sampleSizeBudgetCalculation.Rd man/sampleSizeBudgetCalculation.libPrepCell.Rd man/sampleSizeBudgetCalculation.restrictedDoublets.Rd man/select.cutoffs.Rd man/sim.eqtl.pvals.Rd man/simulated.DE.values.Rd man/simulated.eQTL.values.Rd man/size.estimates.Rd man/sizeFactorsPosCounts.Rd man/sizeFactorsStandard.Rd man/umi.gamma.relation.Rd man/umi.read.relation.Rd man/uniform.ranks.interval.Rd man/visualize.gamma.fits.Rd man/visualize.power.grid.Rd vignettes/extension-complex-design.Rmd vignettes/extension-complex-design.pdf vignettes/introduction-scPower.Rmd vignettes/introduction-scPower.pdf vignettes/reproduce-paper-plots.Rmd vignettes/reproduce-paper-plots.pdf