add_signature_set: add_signature_set

In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)

Description

adding signature object into signature set

Usage

add_signature_set(signature, mscell)

Arguments

signature	julia object of signature (the result of create_signature)
mscell	per-existing signature set (the result of make_signature_set)

Value

merged signature set

Examples

d <- make_input(matrix, train = TRUE)
w2v <- make_w2v("Pubmed_index")
annot <- make_cellontology("cell ontology file")
stopwords <- make_stopwords(stopwords)
signature <- create_signature("user", "Heart", d$norm_matirx, d$rowname, d$cellname, annot, "cell_ontology", w2v_index = TRUE)
sig_set <- add_signature_set(signature, sig_set)
- sig_set: pre-existing signature set

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.