make_tm_facs_signature_set: make_tm_facs_signature_set

Description Usage Arguments Value Examples

View source: R/test_code.R

Description

creating signature set from result of make_input_tm_facs

Usage

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make_tm_facs_signature_set(tm_facs_input, s, annot, data_name, sdatatype)

Arguments

tm_facs_input

result of make_input_tm_facs

s

side-infomration (julia object)

annot

cell_ontology (julia object)

data_name

name for the signature

sdatatype

type of side-information (cell_ontology, ATAC-seq, or user-defined term)

Value

signature set

Examples

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tm_facs_input <- make_input_tm_facs(tm_facs)
w2v <- make_w2v("Pubmed.index")
cell_ontology <- make_cellontology("cell_ontogloy_file")
stopword <- make_stopwords(stopwords)
side_info <- make_w2v_sideinfo(w2v, cell_ontology, stopword)
sig_set <- make_tm_facs_signature_set(tm_facs_input, side_info, cell_ontology, "user", "cell_ontology")

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.