Description Usage Arguments Value Examples
creating signature set from result of make_input_tm_facs
1 | make_tm_facs_signature_set(tm_facs_input, s, annot, data_name, sdatatype)
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tm_facs_input |
result of make_input_tm_facs |
s |
side-infomration (julia object) |
annot |
cell_ontology (julia object) |
data_name |
name for the signature |
sdatatype |
type of side-information (cell_ontology, ATAC-seq, or user-defined term) |
signature set
1 2 3 4 5 6 | tm_facs_input <- make_input_tm_facs(tm_facs)
w2v <- make_w2v("Pubmed.index")
cell_ontology <- make_cellontology("cell_ontogloy_file")
stopword <- make_stopwords(stopwords)
side_info <- make_w2v_sideinfo(w2v, cell_ontology, stopword)
sig_set <- make_tm_facs_signature_set(tm_facs_input, side_info, cell_ontology, "user", "cell_ontology")
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