convert_seurat: convert_seurat
In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)
Description
Usage
Arguments
Value
Examples
Description
covert seurat object into matrix format (same result format as importdata function)
Usage
1
convert_seurat(seurat_object, slot_option = "counts")
Arguments
slot_option
slot parameter in GetAssayData function in Seurat package (should be "counts", otherwise, prediction wouldn't show good result)
seurtat_object
R variable which is a seurat object
Value
a matrix class composed of gene(row)-by-cell(column)
Examples
1
data <- convert_seurat(seurat_obj)
hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.
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Description Usage Arguments Value Examples
Description
covert seurat object into matrix format (same result format as importdata function)
Usage
1 | convert_seurat(seurat_object, slot_option = "counts")
|
Arguments
slot_option |
slot parameter in GetAssayData function in Seurat package (should be "counts", otherwise, prediction wouldn't show good result) |
seurtat_object |
R variable which is a seurat object |
Value
a matrix class composed of gene(row)-by-cell(column)
Examples
1 | data <- convert_seurat(seurat_obj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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