leave_one_val: leave_one_val

In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)

Description

leave one tissue validation of TM (the parameter for side-information of att_set and sig_set must be same)

Usage

leave_one_val(att_set, sig_set)

Arguments

att_set	attribute set
sig_set	signature set

Value

6 results: conf_list, conf_ratio_list, val_list, tissue_list, f1_list, unassign_list

• conf_list: confusion matrix

• conf_ratio_list: ratio_list (confusion_ratio_matrix)

• val_list: validation matrix

• tissue_list

• f1_list: f1 score

• unassign_list

- each result is composed of sample in TM (ex: res$conf_list[1]: confusion matrix of Aorta tissue)

Examples

res <- leave_one_val(att_set, sig_set)

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.