julia_environment: julia_environment

In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)

Description

setup the environment for calling Julia packages and Julia code (CoreFunction.jl, importing pre-existing julia object is optional)

Usage

julia_environment(julia_obj_index = FALSE)

Arguments

julia_obj_index

it should be TRUE if user wants to import pre-existing julia object

Value

return the julia_object if julia_obj_index is TRUE. Otherwise, there is no output
- julia_object

• side_information: word2vector

• cell_ontology: description of cell types

• attribute_set: 'V' matrix

• signature_set: for logistic regression modeling

• meta_model: logistic regression model

Examples

julia_environment()
julia_obj <- julia_environment(julia_obj_index = TRUE)

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.