n_fold_logistic: Title

Description Usage Arguments Value Examples

View source: R/test_code.R

Description

Description

Usage

1
2
3
n_fold_logistic(tm_facs, Gene_usage, s, annot, mincell, Ngene, data_name,
  sdatatype, fdrthr = 0.1, n = 5, k = 1, tissue_opt = FALSE,
  Celltype_specific = FALSE, ncore = 1)

Arguments

tm_facs

result of import_tm_facs

Value

att_set, meta_set, logistic_result

Examples

1
2
3
4
5
6
tm_facs <- input_tm_facs("address")
w2v <- make_w2v("Pubmed.index")
cell_ontology <- make_cellontology("cell_ontogloy_file")
stopword <- make_stopwords(stopwords)
side_info <- make_w2v_sideinfo(w2v, cell_ontology, stopword)
res <- n_fold_logistic(tm_facs, 2048, side_info, cell_ontology, FALSE, 64, "user", "cell_ontology")

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.