estimate_celltype: estimate_celltype
In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)
Description
Usage
Arguments
Value
Examples
Description
prediction of cell type by a given confusion matrix from "predict_cell". Assume binomial distribution: n: total cell count for each query celltype / p: 1/celltypes from cell ontology / X (for z score): cell count for each celltype from cell ontology. Only consider max cell count (draw -> mixed)
Usage
1
estimate_celltype(conf)
Arguments
conf
confusion matrix from "predict_cell"
Value
suggests matched cell type for corresponding query cell type with q-value, respectively
Examples
1
2
confusion <- predict_cell(att_set, query)
estimated_cell <- estimate_celltype(confusion)
hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.
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Description Usage Arguments Value Examples
Description
prediction of cell type by a given confusion matrix from "predict_cell". Assume binomial distribution: n: total cell count for each query celltype / p: 1/celltypes from cell ontology / X (for z score): cell count for each celltype from cell ontology. Only consider max cell count (draw -> mixed)
Usage
1 | estimate_celltype(conf)
|
Arguments
conf |
confusion matrix from "predict_cell" |
Value
suggests matched cell type for corresponding query cell type with q-value, respectively
Examples
1 2 | confusion <- predict_cell(att_set, query)
estimated_cell <- estimate_celltype(confusion)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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