import_sparse: import_sparse

In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)

Description

"importdata" for TM (or multiple "sparse" matrix files)

Usage

import_sparse(address, suffix_file, row_opt = 1)

Arguments

address	scdata address list (contains only the prefix of the file: Heart, Lung ...)
suffix_file	suffix for rowname_file, cellname_file, and sparse matrix format of the suffix_file (should be same order as shown below) _cells.tsv _row.tsv _count.mtx
row_opt	indicates the column number that sholud be used for the gene(peak) name

Value

list of matrix (names: each tissue or filename)

Examples

tm_sparse <- import_sparse("address_file", "suffix_file")

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.