make_signature_set: make_signature_set
In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)
Description
Usage
Arguments
Value
Examples
Description
making signature set
Usage
1
Arguments
signature
julia object of signature (the result of create_signature)
Value
initiallized signature set
Examples
1
2
3
4
5
6
d <- make_input(matrix, train = TRUE)
w2v <- make_w2v("Pubmed_index")
annot <- make_cellontology("cell ontology file")
stopwords <- make_stopwords(stopwords)
signature <- create_signature("user", "Heart", d$norm_matirx, d$rowname, d$cellname, annot, "cell_ontology", w2v_index = TRUE)
sig_set <- make_signature_set(signature)
hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.
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Description Usage Arguments Value Examples
Description
making signature set
Usage
1 |
Arguments
signature |
julia object of signature (the result of create_signature) |
Value
initiallized signature set
Examples
1 2 3 4 5 6 | d <- make_input(matrix, train = TRUE)
w2v <- make_w2v("Pubmed_index")
annot <- make_cellontology("cell ontology file")
stopwords <- make_stopwords(stopwords)
signature <- create_signature("user", "Heart", d$norm_matirx, d$rowname, d$cellname, annot, "cell_ontology", w2v_index = TRUE)
sig_set <- make_signature_set(signature)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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