generate_sideinformation: generate_sideinformation

In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)

Description

generation of side-information from expression or peak matrix

Usage

generate_sideinformation(Side_mat, Cellnames, Sdim = 200)

Arguments

Side_mat	matrix class composed of gene/peak_location(row)-by-cell(column) - same as result of importdata or convert_seurat
Sdim	the size of side-information for each cell type
cellnames	cell name of Side_mat (column name)

Value

a side-information which could be directly used in create_siganture or create_attribute with w2v_index = FALSE (julia_object)

Examples

d <- make_input(input_var)
s <- generate_sideinformation(d$norm_matrix, d$cellname)
- result should be directly used with w2v_index = FALSE

hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.