make_w2v_sideinfo: make_w2v_sideinfo
In hemberg-lab/sctransfermap: sctransfermap for predicting cell type in single-cell data (RNA-seq and ATAC-seq)
Description
Usage
Arguments
Value
Examples
Description
generating a side information of word2vec
Usage
1
2
make_w2v_sideinfo(w2v_obj, cell_ontology_obj, stopword, opt = TRUE,
R_output = FALSE)
Arguments
w2v_obj
the result of make_w2v
cell_ontology_obj
the result of make_cellontology
stopword
the result of make_stopwords
opt
TRUE if mean value for word2vector, FALSE if max value for word2vector
Value
side information of cell_ontology in julia object
Examples
1
2
3
4
w2v <- make_w2v("Pubmed.index")
cell_ontology <- make_cellontology("cell_ontogloy_file")
stopword <- make_stopwords(stopwords)
side_info <- make_w2v_sideinfo(w2v, cell_ontology, stopword)
hemberg-lab/sctransfermap documentation built on Nov. 11, 2019, 6:23 a.m.
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Description Usage Arguments Value Examples
Description
generating a side information of word2vec
Usage
1 2 | make_w2v_sideinfo(w2v_obj, cell_ontology_obj, stopword, opt = TRUE,
R_output = FALSE)
|
Arguments
w2v_obj |
the result of make_w2v |
cell_ontology_obj |
the result of make_cellontology |
stopword |
the result of make_stopwords |
opt |
TRUE if mean value for word2vector, FALSE if max value for word2vector |
Value
side information of cell_ontology in julia object
Examples
1 2 3 4 | w2v <- make_w2v("Pubmed.index")
cell_ontology <- make_cellontology("cell_ontogloy_file")
stopword <- make_stopwords(stopwords)
side_info <- make_w2v_sideinfo(w2v, cell_ontology, stopword)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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