API for ludvigla/spaceST
spaceST
| Global functions | |
|---|---|
| BuildTopicSNN | Man page Source code |
| CalcSNNSparse | Man page Source code |
| CreatespaceSTobject | Man page Source code |
| DE_heatmap | Man page Source code |
| ExtractTopFeaturesST | Man page Source code |
| LDA | Man page |
| NormalizespaceST | Man page |
| NormalizespaceST,spaceST-method | Man page |
| NormalizespaceST,spaceST-methods | Man page |
| RunDEspaceST | Man page Source code |
| RunModularityClusteringspaceST | Man page Source code |
| RunTSNEspaceST | Man page Source code |
| ST_statistics | Man page Source code |
| ST_statistics_plot | Man page Source code |
| SetIfNull | Man page |
| SpatialNetwork | Man page Source code |
| batch.correct | Man page Man page |
| batch.correct,spaceST-methods | Man page |
| calc_cp10k | Man page Source code |
| clusterST | Man page Source code |
| cluster_matrix | Man page Source code |
| cluster_matrix.default | Source code |
| cluster_matrix.spaceST | Source code |
| collect_gene_data | Man page Source code |
| convert | Man page |
| counts | Man page Man page |
| counts,spaceST-methods | Man page |
| dim | Man page |
| dim,spaceST-methods | Man page |
| ensembl2hgnc | Man page Source code |
| ensembl2hgnc.default | Man page Source code |
| ensembl2hgnc.list | Man page Source code |
| ensembl2hgnc.spaceST | Man page Source code |
| filter | Man page Man page |
| filter,spaceST-methods | Man page |
| getLDA | Man page Man page |
| getLDA,spaceST-methods | Man page |
| get_coordinates | Man page Source code |
| get_coordinates.default | Man page Source code |
| get_coordinates.dgCMatrix | Man page Source code |
| get_coordinates.spaceST | Man page Source code |
| merge_exp_list | Man page Source code |
| normcounts | Man page Man page |
| normcounts,spaceST-methods | Man page |
| palette.select | Man page Source code |
| plotPCA | Man page |
| plotPCA,spaceST-method | Man page |
| plotPCA,spaceST-methods | Man page |
| plotTSNE | Man page |
| plotTSNE,spaceST-method | Man page |
| plot_QC_spaceST | Man page Man page |
| plot_QC_spaceST,spaceST-methods | Man page |
| scale2range | Source code |
| show | Man page |
| show,spaceST-methods | Man page |
| smooth.viz | Man page Source code |
| spPCA | Man page Man page |
| spPCA,spaceST-methods | Man page |
| spaceST | Man page Man page |
| spaceST-class | Man page |
| spaceST-methods | Man page |
| spaceST-package | Man page |
| spatial.clusters | Man page Source code |
| spatial.heatmap | Man page Source code |
| spots.under.tissue | Man page |
| spots.under.tissue,spaceST-methods | Man page |
| spots_under_tissue | Man page |
| tessViz | Man page Source code |
| tesselation.plot | Man page Source code |
| tiles2polygon | Man page Source code |
| topic.clusters | Man page Man page |
| topic.clusters,spaceST-methods | Man page |
| topic_compute | Man page Source code |
| topic_compute.default | Man page Source code |
| topic_compute.spaceST | Man page Source code |
| topic_heatmap | Man page Source code |
| var_genes | Man page Source code |
| volcano_plot_spaceST | Man page Source code |
