mkReport: Creates a pdf report

In mariavica/mircomb: An R package for analyzing miRNA-mRNA interactions

Description

Creates a pdf report summarizing the contents of the corObject

Usage

mkReport(obj, file, title = "Default \\texttt{miRComb} output", dat.sum.table = NULL, ddir = getwd() )

Arguments

obj	a corObject
file	name of the file, for example "myExampleReport"
title	Title of the report
dat.sum.table	Minimum dat.sum that will be applied to Table 9 and Figure 6.
ddir	output directory for the tex file. By default: current working directory

Details

Documents myExampleReport.tex and myExampleReport.pdf will be created on the working directory.

See PLoS ONE publication for more details: Vila-Casadesús et al., "MiRComb: an R package to analyse miRNA-mRNA interactions. Examples across five digestive cancers". PLoS ONE, 2016.

Note

This function only works in Linux computers, with LaTeX and texlive already configured.

Some known problems and solutions:

• If this happens: ! ==> Fatal error occurred, no output PDF file produced!

  Try: sudo apt-get install texlive-recommended-fonts or just sudo apt-get install texlive-full

• If you have problems with xcolor package: xcolor.sty not found sudo apt-get install latex-xcolor

• If you have problems with tikz package: tikz.sty not found sudo apt-get install pgf

Examples

### do not run

#data(data.obj)
#mkReport(data.obj,"myExampleReport")

### documents myExampleReport.tex and myExampleReport.pdf will be created

mariavica/mircomb documentation built on Feb. 3, 2020, 2:28 a.m.