translatemiRNAs: Convert miRNA names between versions

In mariavica/mircomb: An R package for analyzing miRNA-mRNA interactions

Description

Convert miRNA names between versions

Usage

translatemiRNAs(x, from = NULL, to = "21", force.translation = FALSE, species = NULL)

Arguments

x	character vector with the names of the miRNAs to translate.
from	character vector, version of the miRBase of the miRNAs to translate. Must be one of: "6.0", "7.0", "7.1", "8.0", "8.1", "8.2", "9.0", "9.1", "9.2", "10.0", "10.1", "11.0", "12.0", "13.0", "14", "15", "16", "17", "18", "19", "20", "21" or "unknown"
to	character vector, version of the miRBase of the miRNAs to translate. Must be one of: "6.0", "7.0", "7.1", "8.0", "8.1", "8.2", "9.0", "9.1", "9.2", "10.0", "10.1", "11.0", "12.0", "13.0", "14", "15", "16", "17", "18", "19", "20", "21"
force.translation	if TRUE, translate known miRNAs from other versions besides from the selected one to final version. Default is FALSE.
species	if some of the miRNAs appear as "miR-xx", indicate which species is.
plot	if version = unknown, make a plot that helps to identify the version of the miRNAs.

Details

If from="unknown" a plot is shown.

Value

A data frame containing the original name of the translated name for each miRNA.

See Also

checkmiRNAs

Examples

translatemiRNAs(c("hsa-let-7b","not-a-miRNA","hsa-miR-200c"), from="6.0", to="21")

mariavica/mircomb documentation built on Feb. 3, 2020, 2:28 a.m.