plotCircos: Circos plot

Description Usage Arguments Value References See Also Examples

Description

Plot a circos plot showing the miRNA-mRNA interactions

Usage

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plotCircos(obj, pval.cutoff = 0.05, dat.sum = obj@info[["dat.sum"]],
 n = NULL, sub.miRNA = NULL, sub.mRNA = NULL)

Arguments

obj

a corObject whith a net slot already definded

pval.cutoff

maximum corrected p value of the selected miRNA-mRNA pairs

dat.sum

numeric, minimum concordance across databases of the selected miRNA-mRNA pairs

n

(optional) numeric. If specified, limit to the first "n" pairs (sorted by corrected p value)

sub.miRNA

(optional) character vector, include only pairs containing these miRNAs.

sub.mRNA

(optional) character vector, include only pairs containing these mRNAs.

Value

a plot

References

www.circos.ca : Krzywinski MI, Schein JE, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: An information aesthetic for comparative genomics. Genome Research, 2009.

http://cran.r-project.org/web/packages/circlize/index.html

See Also

genes_human_h37, mirnas_human_17_h37

Examples

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mariavica/mircomb documentation built on Feb. 3, 2020, 2:28 a.m.