checkmiRNAs: Compare a list of miRNAs with different miRBase versions

In mariavica/mircomb: An R package for analyzing miRNA-mRNA interactions

Description

Compare a list of miRNAs with different miRBase versions and plot the percentage of coincidences accross them.

Usage

checkmiRNAs(v.miRNAs, to.dataframe = FALSE)

Arguments

v.miRNAs	character vector with the miRNA names to test.
to.dataframe	FALSE (default) or TRUE. If TRUE, give a data.frame with the name of all miRBase versions and percentage of coincidences. If FALSE, only plots the result.

Details

This function needs miRData v_0.5.0 or greater to work. Update miRData if needed.

Value

If to.dataframe=TRUE a data.frame with the name of all miRBase versions and percentage of coincidences.

If to.dataframe=FALSE a bar plot showing the name of all miRBase versions (x-axis) and percentage of coincidences (y-axis).

See Also

translatemiRNAs

Examples

comp<-c("hsa-miR-20a","hsa-miR-21","hsa-miR-22",
"hsa-miR-23a","hsa-miR-24","hsa-miR-25","hsa-miR-26a",
"hsa-miR-26b","hsa-miR-27a","hsa-miR-28-5p","hsa-miR-28-3p",
"hsa-miR-29a","hsa-miR-30a")

result_in_table<-checkmiRNAs(comp,to.dataframe=TRUE)

# plot the result
result_in_table

mariavica/mircomb documentation built on Feb. 3, 2020, 2:28 a.m.