writeCsv: Write a csv file

In mariavica/mircomb: An R package for analyzing miRNA-mRNA interactions

Description

Export the cytofile slot to a a csv file.

Usage

writeCsv(obj, name, pval.cutoff = 1, cor = NULL, alternative = "less", dat.sum =
                 obj@info[["dat.sum"]], slot = "net" , pval = "adj.pval")

Arguments

obj	a corObject.
name	the name of the file to write.
pval.cutoff	maximum corrected p value to take.
cor	correlation cutoff.
alternative	"less": select correlations lower than correlation cutoff; "greater": select correlations greater than correlation cutoff; or "two.sided": select correlations with absolute value greater than correlation cutoff.
dat.sum	number of minimum ocurrences across databases.
slot	name of the slot to write. "net" (default), "diffexp.miRNA", "diffexp.mRNA", "dat.miRNA", "dat.mRNA", "pheno.miRNA" or "pheno.mRNA". P-value and dat.sum filtering is applied to "net" slot. P-value filtering is applied to "diffexp.miRNA" and "diffexp.mRNA" slots. No filtering is applied to "dat.miRNA", "dat.mRNA", "pheno.miRNA" or "pheno.mRNA" slots.
pval	name of the p.value column to select.

Value

A csv file.

See Also

writeExcel, writeSif, selSubsetCor, selSubsetExprs

Examples

## do not run
#data(data.obj)
#writeCsv(data.obj,"results_csv.csv")

mariavica/mircomb documentation built on Feb. 3, 2020, 2:28 a.m.