Files in mashranga/MolDia
Single cell In-Situ sequencing (ISS) data analysis
.Rbuildignore
.gitignore
DESCRIPTION
MolDia.Rproj
NAMESPACE
R/0.1_MolDiaISS_class.R
R/0.2_ISS_internal.R
R/0.3_Ex_data.R
R/1.1_readISS.R
R/1.2_writeISS.R
R/1.3_exportISS.R
R/1.4_ISS_rotate.R
R/2.1_ISS_roi.R
R/3.1_ISS_barplot.R
R/3.2_ISS_filter.R
R/3.3_ISS_genesSummary.R
R/3.4_ISS_readsSummary.R
R/3.5_ISS_pieplot.R
R/3.6_ISS_map.R
R/4.1_ISS_preprocess.R
R/5.1_ISS_pca.R
R/5.2_ISS_tsne.R
R/6.1_ISS_cluster.R
R/6.2.1_ISS_cluster_seruat.R
R/6.2.2_ISS_cluster_spatial.R
R/6.3_ISS_ClustSelect.R
R/6.4_ISS_ClustMarker.R
R/6.5_ISS_ClustCompare.R
R/7.1_ISS_compare.R
R/7.2_ISS_ratiocor.R
R/8.1_ISS_deg.R
R/9.1_ISS_lineage.R
README.Rmd
data/marker_gene.rda
data/single_cell.rda
inst/doc/vignettes/MolDia-vignette.Rmd
inst/doc/vignettes/MolDia-vignette.html
inst/doc/vignettes/MolDia-vignette.rar
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-11-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-12-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-17-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-19-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-20-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-20-2.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-22-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-22-2.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-23-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-4-1.png
inst/doc/vignettes/MolDia-vignette_files/figure-html/unnamed-chunk-5-1.png
inst/doc/vignettes/bibliography.bib
inst/doc/vignettes/images/cell_image_1.png
inst/doc/vignettes/images/cell_image_2.png
inst/doc/vignettes/images/outline_1.png
inst/doc/vignettes/images/summary_1.png
inst/doc/vignettes/images/summary_2.png
inst/doc/vignettes/images/ven_pie.png
inst/extdata/CellBlobs_1.csv
inst/extdata/CellBlobs_2.csv
inst/extdata/CellBlobs_QT_0.35.csv
inst/extdata/CellBlobs_QT_0.40.csv
inst/extdata/CellBlobs_ROI.csv
inst/extdata/Hypocampus_left.csv
inst/extdata/Hypocampus_right.csv
inst/extdata/lineage_adult.csv
inst/extdata/lineage_e15.csv
inst/extdata/lineage_p00.csv
inst/extdata/linrage_p07.csv
inst/extdata/nonSeg_QT_0.35_0_details.csv
inst/extdata/polygon_coordinates.csv
man/ISS_barplot.Rd
man/ISS_clustCompare.Rd
man/ISS_clustMarker.Rd
man/ISS_clustSelect.Rd
man/ISS_cluster.Rd
man/ISS_cluster_seruat.Rd
man/ISS_cluster_spatial.Rd
man/ISS_compare.Rd
man/ISS_deg.Rd
man/ISS_filter.Rd
man/ISS_genesSummary.Rd
man/ISS_map.Rd
man/ISS_pca.Rd
man/ISS_pieplot.Rd
man/ISS_preprocess.Rd
man/ISS_ratiocor.Rd
man/ISS_readsSummary.Rd
man/ISS_roi.Rd
man/ISS_rotate.Rd
man/ISS_sumstat.Rd
man/ISS_tsne.Rd
man/MolDiaISS.Rd
man/MolDiaISS_nonsegment.Rd
man/exportISS.Rd
man/marker_gene.Rd
man/readISS.Rd
man/single_cell.Rd
man/writeISS.Rd
