batch.analysis.MA: plot the MA plot for two sets of cells

Description Usage Arguments

View source: R/preprocessing.R

Description

plot the MA plot for two sets of cells

Usage

1
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batch.analysis.MA(x, s1.cols, s2.cols, fig.filename = NULL,
  fig.main = "MA plot", fig.res = 150)

Arguments

x

The expression matrix; rows are genes, cells are columns

s1.cols

(numeric) the column indices for the first set of cells

s2.cols

(numeric) the column indices for the second set of cells

fig.filename

(character) the file name of the output figure; if fig.filename is null, the figure will be plotted to the screen

fig.main

(character) the title of the figure

s1.label

(character) the name for the first set of cells

s2.label

(character) the name for the second set of cells

do.log

(logical) log2 transformation of mean expression values of each gene


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.