batch.analysis: Analyzing batch difference

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Analyzing batch difference

Usage

batch.analysis(object, analysis = c("q", "qq", "ma", "ngenes",
  "distribution"), min.expression = 1, ...)

Arguments

object	A sincera object
analysis	A vector containing the analyses to be performed, including "q" - plotting the quantiles of gene expression in individual cells "qq" - Q-Q plot per sample pair "MA" - MA plot per sample pair "ngene" - Number of expressed genes in cells of different batches "distribution" - The distribution of expression values in cells of different batches
min.expression	The threshold of expressed genes

Value

The updated sincera object with batch analyses results

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.