network.inference: Inferring first order conditional dependencies between TFs...

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Inferring first order conditional dependencies between TFs and TGs Adapted from G1DBN package

Usage

network.inference(data, method = "ls", predPosition = NULL,
  targetPosition = NULL, lag = 0)

Arguments

data	(matrix) the expression data
method	(character) regression method: ls, turkey, huber
targetPosition	(numeric) indices of regulatory targets
lag	(numeric) time lag; 0 for non-time series data
prePosition	(numeric) indices of regulators

Value

a list of score matrices

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.