normalization.log: log transformation

Description Usage Arguments Value Note

View source: R/preprocessing.R

Description

log transformation

Usage

1
normalization.log(x, log.base = 2, min.impute = 0.01, increase = 1)

Arguments

x

The expression matrix; rows are genes, cells are columns

log.base

(numeric) the base of the logarithm

min.impute

(numeric) a numeric value to impute the min expression values

Value

The nomalized expression matrix

Note

This function is from SINCERA version a10242015. It will be upgraded soon.


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.