normalization.log: log transformation
In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.
Description
Usage
Arguments
Value
Note
View source: R/preprocessing.R
Description
log transformation
Usage
1
normalization.log(x, log.base = 2, min.impute = 0.01, increase = 1)
Arguments
x
The expression matrix; rows are genes, cells are columns
log.base
(numeric) the base of the logarithm
min.impute
(numeric) a numeric value to impute the min expression values
Value
The nomalized expression matrix
Note
This function is from SINCERA version a10242015. It will be upgraded soon.
minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.
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Description Usage Arguments Value Note
View source: R/preprocessing.R
Description
log transformation
Usage
1 | normalization.log(x, log.base = 2, min.impute = 0.01, increase = 1)
|
Arguments
x |
The expression matrix; rows are genes, cells are columns |
log.base |
(numeric) the base of the logarithm |
min.impute |
(numeric) a numeric value to impute the min expression values |
Value
The nomalized expression matrix
Note
This function is from SINCERA version a10242015. It will be upgraded soon.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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