construct: Construct a sincera object

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Construct a sincera object from data in memory or files on disk

Usage

construct(exprmatrix = NULL, exprfile = NULL, samplevector = NULL,
  samplefile = NULL, projname = NULL)

Arguments

exprmatrix	The expression matrix; rows are genes, columns are cells
exprfile	The path to the file containing the expression matrix; either exprmatrix or exprfile must be set; if both provided, exprmatrix will be used
samplevector	A vector containing the batch information of cells
samplefile	The path to the file containing the batch information of cells; if both samplevector and samplefile are set to NULL, all cells will be assigned as "sample1"
projname	A string describing the data and analysis

Value

The created sincera object

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.