drivingforce.getLCC: Extract largest connected component (LCC) of the cell group...
In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.
Description
Usage
Arguments
Value
Description
Extract largest connected component (LCC) of the cell group specific TRN
Usage
1
drivingforce.getLCC(object, groups = NULL, thresh = 0.05, ...)
Arguments
object
A sincera object
groups
The cell groups for LCC extraction
thresh
The threshold for significant interactions
Value
An updated sincera object, use getDF with name="lcc" to access the lcc
minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.
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Description Usage Arguments Value
Description
Extract largest connected component (LCC) of the cell group specific TRN
Usage
1 | drivingforce.getLCC(object, groups = NULL, thresh = 0.05, ...)
|
Arguments
object |
A sincera object |
groups |
The cell groups for LCC extraction |
thresh |
The threshold for significant interactions |
Value
An updated sincera object, use getDF with name="lcc" to access the lcc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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