exprs.unique: Identifying group specific unique genes

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Identifying group specific unique genes

Usage

exprs.unique(ES, group.by = CLUSTER.LABEL, groups = NULL,
  unique.ratio = 2, unique.quantile = 0.85, unique.prefix = UNIQUE.PREFIX)

Arguments

ES	(ExpressionSet) an ExpressionSet object containing the single cell RNA-seq data
group.by	(character) the name of the column that contains the cluster information
groups	(character) the clusters for signature prediction
unique.ratio	(numeric) parameter for unique gene metric
unique.quantile	(numeric) parameters for unique gene metric
unique.prefix	(character) prefix for labeling the columns encoding the results of unique metric for each group

Value

an ExpressionSet object containing the results of unique gene metric in the attributes of fData

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.