getExprQuantiles: Get and plot the quantiles of gene expression per cell

Description Usage Arguments Value

View source: R/preprocessing.R

Description

Enable analysis of batch difference by calculation and plotting the quantiles of cellular expression profiles Colors indicate cells from different batches

Usage

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getExprQuantiles(object, probs = c(0.25, 0.5, 0.75, 0.8, 0.85, 0.9, 0.92,
  0.94, 0.96, 0.98, 0.99, 1), lower.bound = -1, upper.bound = Inf,
  do.plot = T)

Arguments

object

A sincera object

probs

a vector of quantiles to be computed

lower.bound

The minimum value for quantile calculation

upper.bound

The maximum value for quantile calculation

do.plot

If true, visualize the quantiles in individual cells with colors indicating different batches

Value

A data frame containing the quantile values of individual cells


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.