exprs.common: Identifying group specific common genes

In minzheguo/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Identifying group specific common genes

Usage

exprs.common(ES, group.by = CLUSTER.LABEL, groups = NULL,
  common.threshold = 5, common.percentage = 0.8,
  common.prefix = COMMON.PREFIX)

Arguments

ES	(ExpressionSet) an ExpressionSet object containing the single cell RNA-seq data
group.by	(character) the name of the column that contains the cluster information
groups	(character) the clusters for signature prediction
common.threshold	(numeric) in common gene metric, expression > COMMON.TRESHOLD will considered as expressed
common.percentage	(numeric) in common gene metric, genes that express in >COMMON.PRECENTAGE cluster cells will be considered as a common
common.prefix	(character) prefix for labeling the columns encoding the results of common metric for each group

Value

an ExpressionSet object containing the results of common gene metrics in the attributes of fData

minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.