filterLowQualityCells: pre-filtering low quality cells

Description Usage Arguments Value

Description

Pre-filtering low quality cells based on library complexity (i.e., the number of genes expressed in a library)

Usage

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filterLowQualityCells(object, min.expression = 1, min.genes = 500,
  do.plot = FALSE, ...)

Arguments

object

A sincera object

min.expression

The threshold value of expressed genes

min.genes

Cells with less than this number of expressed genes will be excluded from downstream analysis

do.plot

If TRUE, plot the distribution of library complexity

Value

An update sincera object with low quality cells pre-filtered


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.