Man pages for mooredf22/protlocassign
Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model
| AcupFromNSA | Convert NSA to Acup |
| AcupFromRSA | Convert RSA to Acup |
| assignCPAloc | Assign to single subcellular location |
| errorList5 | pre-computed errors from CPA on five-fraction data |
| errorList9 | pre-computed errors from CPA on nine-fraction data |
| fCPAone | CPA for protein i |
| fCPAsubsets | Restricted CPA |
| fitCPA | CPA for a set of proteins |
| locationProfileSetup | Reference profiles for CPA |
| markerListJadot | Reference proteins derived from Jadot et al. (2016) |
| markerProfilePlot | Plot profiles of reference proteins |
| meansByProteins | Find mean and standard error of profile for a protein or... |
| mixtureAreaError | Area-based error of mixtures |
| mixtureHeatMap | Heat map of mixture CPA errors |
| mixturePlot | Plot sets of simulated proteins distributed between two... |
| mixturePlotPanel | Panel of mixture plots of all pairwise simulated combinations |
| nearestProts | Identifies proteins with profiles similar to that of a... |
| NSAfromAcup | Convert Acup to NSA |
| NSAfromRSA | Convert RSA to NSA |
| outlierFind | Identify outlier profiles |
| outlierFind_i | Find outlier spectra within a protein or pedtide i. |
| profileSummarize | Calculates a mean protein or peptide profiles and standard... |
| projSimplex | project to a simplex |
| protAcup_test | Protein-level test data set, Acup profiles |
| proteinDataPrep | Formats a data set of spectral profiles for use with... |
| proteinMix | Simulate sets of protein profiles distributed between two... |
| protIndex | Index of protein name |
| protlocassign | Constrained proportional assignment of proteins |
| protNSA_test | Protein-level test data set, NSA profiles |
| protPepPlotfun | Plot reference compartment profiles overlaid with the profile... |
| protPepProfile | Interlace protein profiles and component peptide profiles |
| protPepProfile_i | Combine a protein profile with its component peptide profiles |
| protPlotfun | Plot reference compartment profiles overlaid with the profile... |
| protRSA_test | Protein-level test data set, RSA profiles |
| Qfun4 | Goodness-of-fit internal function |
| Qfun4subset | Constrained goodness-of-fit internal function |
| QuantPSM_test | Test data set containing spectral level profiles not yet... |
| refLocProfAcup | Acup reference profiles |
| refLocProfNSA | NSA reference profiles |
| refLocProfRSA | RSA reference profiles |
| RSAfromAcup | Convert Acup to RSA |
| RSAfromNSA | Convert NSA to RSA |
| spectraNSA_test | Test data set with spectral level profiles formatted for... |
| totProtAT5 | Amount of total protein in each fraction |
| vectorizeAll | Unitize series of vectors |
| vecUnitize | Unitize vector |
