markerListJadot: Reference proteins derived from Jadot et al. (2016)

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

Reference proteins derived from Jadot et al. (2016)

Description

These are a subset of the reference proteins curated by Jadot et al. (2016) for each of the subcellular locations Cytosol (Cyto), Endoplasmic Reticulum (ER), Golgi, Lysosome (Lyso), Mitochondria (Mito), Nucleus (Nuc), Peroxisomes (Perox), and Plasma Membrane (PM).

Format

A data frame with 37 observations on the following 2 variables.

protName

a factor with levels ACP2 ATP1A1 B4GALT1 CANX CAT CD38 CPS1 CTSD DPP3 ENPP1 GANAB GLB1 GLUD1 GPT HAO1 HEXA HIST1H1D ITGB1 LMNA LMNB1 LMNB2 MAN1A2 MAN2A1 MDH2 MGAT1 NT5E PC PCK1 PGM1 PHYH POR RPN2 SDHA ST6GAL1 UGGT1 UGT2B37 UOX

referenceCompartment

a factor with levels Cyto ER Golgi Lyso Mito Nuc Perox PM

Value

data frame with 37 observations on marker proteins

Source

Jadot M, Boonen M, Thirion J, Wang N, Xing J, Zhao C, Tannous A, Qian M, Zheng H, Everett JK, Moore DF, Sleat DE, and Lobel P (2016) Accounting for protein subcellular localization: a compartmental map of the rat liver proteome. Molecular and Cellular Proteomics 16, 194-212. doi:10.1074/mcp.M116.064527 PMCID: PMC5294208

Examples

data(markerListJadot)
head(markerListJadot)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.