totProtAT5: Amount of total protein in each fraction
In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model
totProtAT5 R Documentation
Amount of total protein in each fraction
Description
This is a vector that gives the amount of total protein derived
from a gram of tissue homogenate in the nine fractions of
experiment AT5 from Tannous et al. 2000.
The values are in the same order as those in protNSA_test:
there is a value for each of the six differential centrifugation
fractions (N, M, L1, L2, P and S) and the three Nycodenz fractions.
Note that the sum of the six differential centrifugation fractions
is used to estimate the total protein in the tissue homogenate.
Usage
data(totProtAT5)
Format
A vector containing total protein values for fractions
“N” “M” “L1” “L2” “P” “S” “Nyc.1” “Nyc.2” “Nyc.3””
Value
amount of total protein in each fraction
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.;
Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis
of Quantitative Mass Spectrometric Methods for Subcellular Proteomics.
J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(totProtAT5)
totProtAT5
mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| totProtAT5 | R Documentation |
Amount of total protein in each fraction
Description
This is a vector that gives the amount of total protein derived from a gram of tissue homogenate in the nine fractions of experiment AT5 from Tannous et al. 2000. The values are in the same order as those in protNSA_test: there is a value for each of the six differential centrifugation fractions (N, M, L1, L2, P and S) and the three Nycodenz fractions. Note that the sum of the six differential centrifugation fractions is used to estimate the total protein in the tissue homogenate.
Usage
data(totProtAT5)Format
A vector containing total protein values for fractions “N” “M” “L1” “L2” “P” “S” “Nyc.1” “Nyc.2” “Nyc.3””
Value
amount of total protein in each fraction
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(totProtAT5)
totProtAT5
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.