locationProfileSetup: Reference profiles for CPA

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

Reference profiles for CPA

Description

Set up reference profiles for constrained proportional assignment

Usage

locationProfileSetup(profile, markerList, numDataCols)

Arguments

profile	data frame of specified protein(row name) profiles
markerList	list of reference proteins and their subcellular locations
numDataCols	number of fractions in each profile

Value

A data frame of profiles of the subcellular locations

Examples

data(protNSA_test)
data(markerListJadot)
refLocProfNSA_out <- locationProfileSetup(profile=protNSA_test,
  markerList=markerListJadot, numDataCols=9)
round(head(refLocProfNSA_out), digits=4)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.