refLocProfNSA: NSA reference profiles

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

NSA reference profiles

Description

Profiles for the subcellular compartments based on NSA profile means of the individual reference proteins that represent each compartment. This function produces a matrix that has one row for each compartment and one column for each fraction that comprises the profile. Data from the TMT MS2 data, AT5 experiment; see Tannous et al. See help file for 'locationProfileSetup' for more information.

Usage

data(refLocProfNSA)

Format

List of profiles

Value

profiles for subcellular compartments based on NSA means

N

a numeric vector

M

a numeric vector

L1

a numeric vector

L2

a numeric vector

P

a numeric vector

S

a numeric vector

Nyc1

a numeric vector

Nyc2

a numeric vector

Nyc3

a numeric vector

References

Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.

Examples

data(refLocProfNSA)
round(refLocProfNSA, digits=4)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.