protIndex: Index of protein name

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

Index of protein name

Description

Return index of a protein name and (if exactMatch=FALSE, the default) indices of proteins starting with characters that match the string given in 'protName'. If exactMatch=TRUE, return only the index of a protein name that exactly matches 'protName'.

Usage

protIndex(protName, profile, exactMatch = FALSE)

Arguments

protName	name of protein to search for
profile	data frame of specified protein(row name) profiles
exactMatch	default is FALSE

Value

The protein name and its index (row in profile)

Examples

data(protNSA_test)
protIndex('TLN1', profile=protNSA_test)
protIndex('TLN', profile=protNSA_test)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.