protNSA_test: Protein-level test data set, NSA profiles
In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model
protNSA_test R Documentation
Protein-level test data set, NSA profiles
Description
NSA profiles. NSA refers to data in the form of normalized
specific amounts, where a constant amount of total protein from each
fraction is analyzed and the signal attributed to a specific protein
in each fraction is scaled so the values sum to one (see Tutorial 3).
The test data set was derived from TMT MS2 data from experiment
AT5 of Tannous et al and consists of mean profiles for proteins
TLN1, TLN2, AIF1, and
the proteins and listed in “markerListJadot”.
Usage
data(protNSA_test)
Format
A test data set
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
Nspectraa numeric vector
Npepa numeric vector
Value
A test data set
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.;
Germain, C. J.; Moore, D. F.;
Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of
Quantitative Mass Spectrometric Methods for Subcellular Proteomics.
J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(protNSA_test)
str(protNSA_test)
mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.
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| protNSA_test | R Documentation |
Protein-level test data set, NSA profiles
Description
NSA profiles. NSA refers to data in the form of normalized specific amounts, where a constant amount of total protein from each fraction is analyzed and the signal attributed to a specific protein in each fraction is scaled so the values sum to one (see Tutorial 3). The test data set was derived from TMT MS2 data from experiment AT5 of Tannous et al and consists of mean profiles for proteins TLN1, TLN2, AIF1, and the proteins and listed in “markerListJadot”.
Usage
data(protNSA_test)
Format
A test data set
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
Nspectraa numeric vector
Npepa numeric vector
Value
A test data set
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(protNSA_test)
str(protNSA_test)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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