markerProfilePlot: Plot profiles of reference proteins

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

Plot profiles of reference proteins

Description

This function plots profiles of reference proteins and also the average profile for each compartment

Usage

markerProfilePlot(
  refLoc,
  profile,
  markerList,
  refLocationProfiles,
  ylab = "",
  refProtPlot = NULL
)

Arguments

refLoc	name of the reference subcellular compartment to plot
profile	data frame of specified protein (row name) profiles
markerList	list of reference proteins
refLocationProfiles	data frame of profiles for the reference compartments
ylab	label for y=axis, eg, 'NSA'
refProtPlot	indices of reference proteins to plot; default is NULL

Value

Plot of profiles of reference (marker) proteins

Examples

data(protNSA_test)
data(markerListJadot)
data(refLocProfNSA)
markerProfilePlot(refLoc='PM', profile=protNSA_test,
   markerList=markerListJadot,
   refLocationProfiles=refLocProfNSA, ylab='NSA')

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.