refLocProfAcup: Acup reference profiles
In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model
refLocProfAcup R Documentation
Acup reference profiles
Description
Profiles for the subcellular compartments based on Acup profile means of the
individual reference proteins that represent each compartment.
This function produces a matrix that has one row for each
compartment and one column for each fraction that comprises the profile.
Data from the TMT MS2 data, AT5 experiment; see Tannous et al.
Created using AcupFromNSA on refLocProfNSA.
See help file for 'refLocProfNSA' and 'AcupFromNSA' for more information.
Usage
data(refLocProfAcup)
Format
List of profiles
Value
profiles for subcellular compartments
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.;
Germain, C. J.; Moore, D. F.;
Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of
Quantitative Mass Spectrometric Methods for Subcellular Proteomics.
J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(refLocProfAcup)
round(refLocProfAcup, digits=4)
mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.
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| refLocProfAcup | R Documentation |
Acup reference profiles
Description
Profiles for the subcellular compartments based on Acup profile means of the individual reference proteins that represent each compartment. This function produces a matrix that has one row for each compartment and one column for each fraction that comprises the profile. Data from the TMT MS2 data, AT5 experiment; see Tannous et al. Created using AcupFromNSA on refLocProfNSA. See help file for 'refLocProfNSA' and 'AcupFromNSA' for more information.
Usage
data(refLocProfAcup)
Format
List of profiles
Value
profiles for subcellular compartments
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(refLocProfAcup)
round(refLocProfAcup, digits=4)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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