proteinMix: Simulate sets of protein profiles distributed between two...

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

Simulate sets of protein profiles distributed between two compartments

Description

Compute the Acup profiles of simulated proteins that are distributed between two compartments in specified proportions

Usage

proteinMix(AcupRef, Loc1, Loc2, increment.prop = 0.1)

Arguments

AcupRef	data frame containing Acup profiles for the reference compartments
Loc1	row number of one compartment
Loc2	row number of other compartment
increment.prop	increments in proportion residing in Loc1(from 0 to 1); Default is 0.1

Value

A data frame containing Acup profiles for the simulated proteins

Examples

data(refLocProfAcup)

# Compute mixtures
mixCytoLysoAcup <- proteinMix(AcupRef=refLocProfAcup,
                              increment.prop=0.1,
                              Loc1=1, Loc2=4)
round(mixCytoLysoAcup, digits=4)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.