protAcup_test: Protein-level test data set, Acup profiles
In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model
protAcup_test R Documentation
Protein-level test data set, Acup profiles
Description
Acup profiles. Acup denotes relative amounts, which is the amount
of given protein in a fraction / amount of that given protein
in starting material (see Tutorial 3).
The test set was derived from TMT MS2 data from experiment AT5 of
Tannous et al and consists of mean profiles for proteins
TLN1, TLN2, AIF1 and those listed in “markerListJadot”.
Usage
data(protAcup_test)
Format
a test data set
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
Nspectraa numeric vector
Npepa numeric vector
Value
a test data set
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.;
Germain, C. J.; Moore, D. F.;
Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of
Quantitative Mass Spectrometric Methods for Subcellular Proteomics.
J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(protAcup_test)
str(protAcup_test)
mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| protAcup_test | R Documentation |
Protein-level test data set, Acup profiles
Description
Acup profiles. Acup denotes relative amounts, which is the amount of given protein in a fraction / amount of that given protein in starting material (see Tutorial 3). The test set was derived from TMT MS2 data from experiment AT5 of Tannous et al and consists of mean profiles for proteins TLN1, TLN2, AIF1 and those listed in “markerListJadot”.
Usage
data(protAcup_test)
Format
a test data set
Na numeric vector
Ma numeric vector
L1a numeric vector
L2a numeric vector
Pa numeric vector
Sa numeric vector
Nyc1a numeric vector
Nyc2a numeric vector
Nyc3a numeric vector
Nspectraa numeric vector
Npepa numeric vector
Value
a test data set
References
Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.
Examples
data(protAcup_test)
str(protAcup_test)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.