refLocProfRSA: RSA reference profiles

In mooredf22/protlocassign: Estimation of protein distribution from quantitative subcellular fractionation experiments using a constrained proportional assignment model

RSA reference profiles

Description

Profiles for the subcellular compartments based on RSA profile means of the individual reference proteins that represent each compartment. This function produces a matrix that has one row for each compartment and one column for each fraction that comprises the profile. Data from the TMT MS2 data, AT5 experiment; see Tannous et al. Created using RSAfromNSA on refLocProfNSA (see Tutorial 2). See help file for 'refLocProfNSA' and 'RSAfromNSA' for more information.

Usage

data(refLocProfRSA)

Format

List of profiles

Value

profiles for subcellular compartments based on RSA means

N

a numeric vector

M

a numeric vector

L1

a numeric vector

L2

a numeric vector

P

a numeric vector

S

a numeric vector

Nyc1

a numeric vector

Nyc2

a numeric vector

Nyc3

a numeric vector

References

Tannous, A.; Boonen, M.; Zheng, H.; Zhao, C.; Germain, C. J.; Moore, D. F.; Sleat, D. E.; Jadot, M.; Lobel, P., Comparative Analysis of Quantitative Mass Spectrometric Methods for Subcellular Proteomics. J Proteome Res 2020, 19, (4), 1718-1730.

Examples

data(refLocProfRSA)
round(refLocProfRSA, digits=4)

mooredf22/protlocassign documentation built on Sept. 13, 2023, 3:57 p.m.