NSAfromAcup: Compute relative specific amount from relative amounts in...

Description Usage Arguments Value Examples

View source: R/RSAtransform.r

Description

Compute relative specific amount from relative amounts in protein fractions

Usage

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NSAfromAcup(Acup, NstartMaterialFractions, totProt = NULL)

Arguments

Acup

amount of given protein in fraction / amount of that given protein in starting material

NstartMaterialFractions

Number of differential fractions, typically 6, for N, M, L1, L2, P, and S

totProt

Total protein counts in each of the differential and nycodenz fractions; this is necessary to compute RSA's

Value

NSA: normalized specific amount

Examples

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data(protNSA_test)
data(totProtAT5)
protAcup <- AcupFromNSA(protNSA_test[,seq_len(9)], NstartMaterialFractions = 9, totProt=totProtAT5)
protNSA <- NSAfromAcup(protAcup, NstartMaterialFractions = 9, totProt=totProtAT5)
all.equal(protNSA, protNSA_test[,seq_len(9)])

mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.