markerListJadot: Reference proteins from Jadot et al. (2016)

In mooredf22/protlocassign0p1p1: Compute constrained proportional assignments for fractionated protein abundance

Description

These are the reference proteins curated by Jadot et al. (2016) for each of the subcellular locations Cytosol, ER, Golgi, Lysosome, Mitochondria, Nucleus, Peroxisomes, and Plasma Membrane. The protein "TPP1" was originally used as a reference for Lysosomes, but has been removed here.

Format

A data frame with 39 observations on the following 2 variables.

protName

a factor with levels ACP2 ADH1 ATP1A1 B4GALT1 CANX CAT CD38 CPS1 CTSD DPP3 ENPP1 GANAB GLB1 GLUD1 GPT HAO1 HEXA HIST1H1D ITGB1 LMNA LMNB1 LMNB2 MAN1A2 MAN2A1 MDH2 MGAT1 Mt-CO2 NT5E PC PCK1 PGM1 PHYH POR RPN2 SDHA ST6GAL1 UGGT1 UGT2B37 UOX

referenceCompartment

a factor with levels Cytosol ER Golgi Lysosome Mitochondria Nucleus Peroxisomes Plasma membrane

Source

Jadot M, Boonen M, Thirion J, Wang N, Xing J, Zhao C, Tannous A, Qian M, Zheng H, Everett JK, Moore DF, Sleat DE, and Lobel P (2016) Accounting for protein subcellular localization: a compartmental map of the rat liver proteome. Molecular and Cellular Proteomics 16, 194-212. doi:10.1074/mcp.M116.064527 PMCID: PMC5294208

Examples

data(markerListJadot)
str(markerListJadot)

mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.