locationProfileSetup: Set up reference profiles for constrained proportional...
In mooredf22/protlocassign0p1p1: Compute constrained proportional assignments for fractionated protein abundance
Description
Usage
Arguments
Value
Examples
Description
Set up reference profiles for constrained proportional assignment
Usage
1
locationProfileSetup(profile, markerList, numDataCols)
Arguments
profile
data frame of protein identifiers (protName) and their relative abundance in centrifugation fractions.
markerList
List of reference proteins and their subcellular locations
numDataCols
Number of channels of abundance levels
Value
A matrix refLocationProfiles giving the abundance level profiles of the subcellular locations
Examples
1
2
refLocationProfilesNSA <- locationProfileSetup(profile=protNSA_AT5tmtMS2,
markerList=markerListJadot, numDataCols=9)
mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.
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Description Usage Arguments Value Examples
Description
Set up reference profiles for constrained proportional assignment
Usage
1 | locationProfileSetup(profile, markerList, numDataCols)
|
Arguments
profile |
data frame of protein identifiers (protName) and their relative abundance in centrifugation fractions. |
markerList |
List of reference proteins and their subcellular locations |
numDataCols |
Number of channels of abundance levels |
Value
A matrix refLocationProfiles giving the abundance level profiles of the subcellular locations
Examples
1 2 | refLocationProfilesNSA <- locationProfileSetup(profile=protNSA_AT5tmtMS2,
markerList=markerListJadot, numDataCols=9)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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