RSAfromAcup: Compute relative specific amount from relative amounts in...
In mooredf22/protlocassign0p1p1: Compute constrained proportional assignments for fractionated protein abundance
Description
Usage
Arguments
Value
Examples
Description
Compute relative specific amount from relative amounts in protein fractions
Usage
1
RSAfromAcup(Acup, NstartMaterialFractions, totProt = NULL)
Arguments
Acup
amount of given protein in fraction / amount of that given protein in starting material
NstartMaterialFractions
Number of differential fractions, typically 6, for N, M, L1, L2, P, and S
totProt
Total protein counts in each of the differential and nycodenz fractions; this is necessary to compute RSA's
Value
rsa: relative specific amount
Examples
1
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3
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5
6
data(protNSA_test)
data(totProtAT5)
protAcup <- AcupFromNSA(protNSA_test[,seq_len(9)], NstartMaterialFractions = 9, totProt=totProtAT5)
protRSA <- RSAfromAcup(protAcup, NstartMaterialFractions = 9, totProt=totProtAT5)
protNSA <- NSAfromRSA(protRSA)
all.equal(protNSA, protNSA_test[,seq_len(9)] )
mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.
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Description Usage Arguments Value Examples
Description
Compute relative specific amount from relative amounts in protein fractions
Usage
1 | RSAfromAcup(Acup, NstartMaterialFractions, totProt = NULL)
|
Arguments
Acup |
amount of given protein in fraction / amount of that given protein in starting material |
NstartMaterialFractions |
Number of differential fractions, typically 6, for N, M, L1, L2, P, and S |
totProt |
Total protein counts in each of the differential and nycodenz fractions; this is necessary to compute RSA's |
Value
rsa: relative specific amount
Examples
1 2 3 4 5 6 | data(protNSA_test)
data(totProtAT5)
protAcup <- AcupFromNSA(protNSA_test[,seq_len(9)], NstartMaterialFractions = 9, totProt=totProtAT5)
protRSA <- RSAfromAcup(protAcup, NstartMaterialFractions = 9, totProt=totProtAT5)
protNSA <- NSAfromRSA(protRSA)
all.equal(protNSA, protNSA_test[,seq_len(9)] )
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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