proteinMix: compute a mixture of proteins in two compartments

In mooredf22/protlocassign0p1p1: Compute constrained proportional assignments for fractionated protein abundance

Description

compute a mixture of proteins in two compartments

Usage

proteinMix(AcupRef, Loc1, Loc2, increment.prop = 0.1)

Arguments

AcupRef	amount of given protein in fraction / amount of given protein in starting material
Loc1	row number of one compartment
Loc2	row number of other compartment
increment.prop	fraction increment from 0 to 1

Value

mixAmount relative amounts of proteins in the fractions

Examples

data(protNSA_test)
data(markerListJadot)
data(totProtAT5)
refLocationProfilesNSA <- locationProfileSetup(profile=protNSA_test,
                                               markerList=markerListJadot, numDataCols=9)
round(refLocationProfilesNSA, digits=3)
# Convert NSA reference profiles to Acup to prepare for forming mixtures
refLocationProfilesAcup <- AcupFromNSA(NSA=refLocationProfilesNSA, NstartMaterialFractions=6,
                                       totProt=totProtAT5)
round(refLocationProfilesAcup, digits=4)
# Compute mixtures
mixCytoLysoAcup <- proteinMix(AcupRef=refLocationProfilesAcup,
                              increment.prop=0.1,
                              Loc1=1, Loc2=4)

mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.