markerProfilePlot: Plot profiles of reference proteins

In mooredf22/protlocassign0p1p1: Compute constrained proportional assignments for fractionated protein abundance

Description

This function plots profiles of reference proteins and also the average profile for each compartment

Usage

markerProfilePlot(
  refLoc,
  profile,
  markerList,
  refLocationProfiles,
  ylab = "",
  refProtPlot = NULL
)

Arguments

refLoc	the name of the reference subcellular compartment to plot
profile	data frame of protein names (as row names) and relative abundance levels.
markerList	List of reference proteins
refLocationProfiles	A matrix refLocationProfiles giving the abundance level profiles of the subcellular locations
ylab	label for y=axis, eg, "NSA"
refProtPlot	indices of reference proteins to plot; default is NULL

Value

plot only

Examples

refLocationProfilesNSA <- locationProfileSetup(profile=protNSA_AT5tmtMS2,
   markerList=markerListJadot, numDataCols=9)
markerProfilePlot(refLoc="PM", profile=protNSA_AT5tmtMS2, markerList=markerListJadot,
   refLocationProfiles=refLocationProfilesNSA, ylab="NSA")

mooredf22/protlocassign0p1p1 documentation built on Feb. 7, 2022, 1:55 a.m.