TurningPlot: TurningPlot:

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Fits a spline to a given gene in a given dataset. Finds the turning points. Plots the turning points and spline.

Usage

TurningPlot(genename, dataset, timelag = 0, print = TRUE, save = FALSE)

Arguments

genename	The name of a gene intended for plotting. Must be a string.
dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
timelag	Lags the time. Usually desired if wanting to start from t = 0. Defaults to 0.
print	Logical. If TRUE renders plot in the plot viewer. Defaults to TRUE
save	Logical. If TRUE, saves plot to working directory. Defaults to FALSE.

Value

Prints or saves ggplot2 object(s)

Examples

TurningPlot('comp100000_c0_seq2',Laurasmappings)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.