ZeroFilter: ZeroFilter

In nathansam/CircadianTools: Collection of Tools for Detecting Rhythmic Genes

Description

Filters a transcriptomics dataset such that there is a minimum number of non-zero activity readings for each gene in the resultant dataset.

Usage

ZeroFilter(dataset, non_zero_num = 4, nthreads = NULL)

Arguments

dataset	A transcriptomics dataset. First columns should be gene names. All other columns should be expression levels.
non_zero_num	The minimum number of non-zero activity readings for genes in the filtered dataset.
nthreads	Number of processor threads for the filtering. If not specifed then the maximum number of logical cores are used.

Examples

Laurasmappings_filtered <- ZeroFilter(Laurasmappings, nthreads = 2)

nathansam/CircadianTools documentation built on Dec. 26, 2019, 11:30 a.m.